genomeview
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Contents:
GenomeView Details
Convenience Methods for Displaying Genomic Data
Adding a coordinate axis
Visualizing read information in BAM files
Plotting continuous genomic data
Rendering shapes and text
Advanced Usage
genomeview
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Index
A
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B
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C
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D
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F
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G
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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V
A
add_series() (genomeview.GraphTrack method)
Axis (class in genomeview)
B
bam_track_class (genomeview.GroupedBAMTrack attribute)
BigWigTrack (class in genomeview)
C
category_label_fn (genomeview.GroupedBAMTrack attribute)
D
doc (in module genomeview)
draw_interval() (genomeview.SingleEndBAMTrack method)
draw_mismatches (genomeview.SingleEndBAMTrack attribute)
F
fetch() (genomeview.SingleEndBAMTrack method)
G
get_seq() (genomeview.Scale method)
get_ticks() (in module genomeview)
GraphTrack (class in genomeview)
GroupedBAMTrack (class in genomeview)
I
include_read_fn (genomeview.SingleEndBAMTrack attribute)
include_secondary (genomeview.SingleEndBAMTrack attribute)
K
keyfn (genomeview.GroupedBAMTrack attribute)
L
line() (genomeview.svg.Renderer method)
line_with_arrows() (genomeview.svg.Renderer method)
M
match_chrom_format() (genomeview.SingleEndBAMTrack method)
N
nuc_colors (genomeview.SingleEndBAMTrack attribute)
O
outformat (in module genomeview)
outpath (in module genomeview)
overlap_color (genomeview.PairedEndBAMTrack attribute)
P
PairedEndBAMTrack (class in genomeview)
Q
quick_consensus (genomeview.SingleEndBAMTrack attribute)
R
rect() (genomeview.svg.Renderer method)
relpixels() (genomeview.Scale method)
Renderer (class in genomeview.svg)
S
save() (in module genomeview)
Scale (class in genomeview)
SingleEndBAMTrack (class in genomeview)
space_between (genomeview.GroupedBAMTrack attribute)
T
text() (genomeview.svg.Renderer method)
text_with_background() (genomeview.svg.Renderer method)
topixels() (genomeview.Scale method)
V
visualize_data() (in module genomeview)
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